| Date | Home | V | Away | Result | Scorers |
| 10/09/06 | Corby Kingswood | V | Thrapston Town | 1-5 | Rawcliffe, Bruce, Evans (3) |
| 17/09/06 | Thrapston Town | V | Corby Hellenic Fisher | 0-5 | - |
| 24/09/06 | Earls Barton | V | Thrapston Town | 7-0 | - |
| 01/10/06 | Thrapston Town | V | Vicarage Farm | 3-1 | Rawcliffe, Smith, Spicker |
08/10/06 | Higham Colts (C/Cup 1st Round) | V | Thrapston Town | 3-1 | Bruce |
15/10/06 | League Cup 1st Round - Bye | V | - | - | - |
22/10/06 | Ise Lodge | V | Thrapston Town | 1-1 | Rawcliffe |
29/10/06 | Thrapston Town | V | FC Aztec | 1-2 | Rawcliffe |
12/11/06 | Thrapston Town | V | Rushden Rangers | 4-1 | Anns, Lewis, Rawcliffe (2) |
19/11/06 | Thrapston Town | V | Rockingham Forest Youth | 2-4 | Rawcliffe, Spicker |
26/11/06 | Thrapston Town (L/Cup 2nd Rnd) | V | Danesholme Vikings | 2-3 | Rawcliffe, Smith |
03/12/06 | Thrapston Town | V | Ise Lodge Eagles | 1-3 | Fox |
10/12/06 | Ise Lodge Eagles | V | Thrapston Town | 9-0 | - |
17/12/06 | Thrapston Town | V | Corby Kingswood | 4-2 | Rawcliffe (3), Spicker |
14/01/07 | Thrapston Town | V | Earls Barton | P-P | - |
28/01/07 | Thrapston Town | V | Ise Lodge | 1-2 | Lewis |
04/02/07 | FC Aztec | V | Thrapston Town | P-P | - |
18/02/07 | Rushden Rangers | V | Thrapston Town | 1-2 | Evans, Fox |
25/02/07 | Rockingham Forest Youth | V | Thrapston Town | 5-1 | Kirk |
04/03/07 | Thrapston Town | V | Higham Colts | P-P | - |
11/03/07 | Vicarage Farm | V | Thrapston Town | 8-0 | - |
18/03/07 | FC Aztec | V | Thrapston Town | 1-1 | Spicker |
22/04/07 | Higham Colts | V | Thrapston Town | 2-1 | Smith |
06/05/07 | Thrapston Town | V | Earls Barton | 1-1 | Evans |
12/05/07 | Corby Hellenic Fisher | V | Thrapston Town | 8-1 | Ward |
13/05/07 | Thrapston Town | V | Higham Colts | 1-3 | Kirk |